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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41954840_41956038_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41954840 - 41956038
Intron Length:
1199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTGC
5'SS Class:
major
3'SS Sequence:
TTTCTTTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTCTTTGAACA
Flanking Amino Acid:
EELNKKLANKVVYNVGLCIC
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
66
40.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79
0.65
1
76.9
36
Minor 5ss
44.3
-0.6
2.8
59.8
44.8
Minor BPS
66.9
0.53
1.4
77.33
32.8

Associated Gene:

Gene:
POLR3H
Ensembl Gene ID:
ENSAPLG00000005063
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005219
41950529 - 41956149
5621