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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41963517_41963622_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41963517 - 41963622
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGC|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TTCCCTCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACCGAG
U12 Branch Point Sequence:
CGTCCCTTCCCT
Flanking Amino Acid:
LPTKRTRTYSATARASAGPV
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.3
69.7
41.3
Major BPS
40
-0.6
1.5
33.5
34
Major PPT
78.1
0.63
0.7
73
25.2
Minor 5ss
37.9
-1.4
2.6
42.8
36.9
Minor BPS
41.6
-0.5
3.6
69.9
46.6

Associated Gene:

Gene:
CSDC2
Ensembl Gene ID:
ENSAPLG00000005057
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005215
41963341 - 41964131
791