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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41980558_41981714_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41980558 - 41981714
Intron Length:
1157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TTTGCCTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
ATGTGTTTATTT
Flanking Amino Acid:
ITDLPSEVLATPFGQALRPL
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.2
77.8
38.7
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
83
0.74
0.8
80.8
31.1
Minor 5ss
35.3
-1.7
2.8
41.7
38.2
Minor BPS
49.6
0.05
2
69.42
42.6

Associated Gene:

Gene:
DESI1
Ensembl Gene ID:
ENSAPLG00000016507
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044695
41980464 - 41989495
9032