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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41981838_41982661_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41981838 - 41982661
Intron Length:
824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTGGCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CATGTTTCAATT
Flanking Amino Acid:
YLSSLGESMFRSESYNIFEH
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
76.5
39.2
Major BPS
100
1.24
0.5
100
0
Major PPT
65.3
0.34
1
60.1
40.4
Minor 5ss
36.6
-1.5
2.7
46.7
41.7
Minor BPS
49.5
0.04
1.6
64.08
41.3

Associated Gene:

Gene:
DESI1
Ensembl Gene ID:
ENSAPLG00000016507
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044695
41980464 - 41989495
9032