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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41983302_41984172_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41983302 - 41984172
Intron Length:
871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TATTCCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTCCTTTATTT
Flanking Amino Acid:
VMLGKQLEGIWHTSIIVHKD
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.6
30.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.2
0.54
1
70.2
36
Minor 5ss
33.1
-1.9
3.2
40.3
40.2
Minor BPS
68.7
0.66
1.5
85.14
35.6

Associated Gene:

Gene:
DESI1
Ensembl Gene ID:
ENSAPLG00000016507
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044695
41980464 - 41989495
9032