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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41984195_41989404_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41984195 - 41989404
Intron Length:
5210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGGCTC
5'SS Class:
major
3'SS Sequence:
TTTCTGCATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTTTCTGCATA
Flanking Amino Acid:
MARRLSPVMLGKQLEGIWHT
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
64.2
41.9
Major BPS
80
0.75
1
78.6
31
Major PPT
79.1
0.65
0.9
73.2
36.4
Minor 5ss
30.4
-2.2
3.4
42.7
44.4
Minor BPS
57.7
0.23
1.9
75.52
36.2

Associated Gene:

Gene:
DESI1
Ensembl Gene ID:
ENSAPLG00000016507
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044695
41980464 - 41989495
9032