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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41990046_41990358_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41990046 - 41990358
Intron Length:
313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
GCATGCTTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
ACGTTTTGACCC
Flanking Amino Acid:
AATPFDMTMQCIRNVYTSKI
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
71.9
0.49
1
61.5
44.3
Minor 5ss
28.9
-2.4
3.3
37.6
47.1
Minor BPS
46.6
-0.2
1.7
52.29
39.7

Associated Gene:

Gene:
XRCC6
Ensembl Gene ID:
ENSAPLG00000004469
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004614
41989738 - 42002111
12374