Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41990498_41992384_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41990498 - 41992384

Intron Length:

1887

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAGGCA

5'SS Class:

major

3'SS Sequence:

TCATTTCCCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

GTATTTCTAATA

Flanking Amino Acid:

VYVLQDLDNPGAKRVLELDQ

Intron Amino Acid Position:

119

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.8

0.7

69.1

35.5

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

0.56

0.8

30.8

Minor 5ss

28.9

-2.4

3.5

38.8

46.5

Minor BPS

54.9

0.15

1.6

65.1

35.2

Associated Gene:

Gene:

XRCC6

Ensembl Gene ID:

ENSAPLG00000004469

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004614

41989738 - 42002111

12374