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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41993693_41995054_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41993693 - 41995054
Intron Length:
1362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTACACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GCTTTTTTACAC
Flanking Amino Acid:
AKETRKRALVRLNLYLNKDL
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
75.7
34.4
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
83.5
0.75
0.8
80
31
Minor 5ss
30.4
-2.2
3.5
42.4
45.1
Minor BPS
49.8
-0
1.7
59.22
40.2

Associated Gene:

Gene:
XRCC6
Ensembl Gene ID:
ENSAPLG00000004469
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004614
41989738 - 42002111
12374