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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_41995242_41996472_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41995242 - 41996472
Intron Length:
1231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
CTCTCTCTAATT
Flanking Amino Acid:
LLPSDTKRAQVYGNRQIVLE
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
77.6
33.1
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
72
0.49
0.9
70.6
33.8
Minor 5ss
38.5
-1.3
3.4
55.5
48.6
Minor BPS
61.2
0.43
1.7
75.83
41.7

Associated Gene:

Gene:
XRCC6
Ensembl Gene ID:
ENSAPLG00000004469
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004614
41989738 - 42002111
12374