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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42000344_42001193_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42000344 - 42001193
Intron Length:
850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CTGTTTTGAAGA
Flanking Amino Acid:
MEPEQAEDLTMPKSEEMSRR
Intron Amino Acid Position:
515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
0.9
83.4
27.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
86
0.81
0.6
80.7
31.3
Minor 5ss
35.7
-1.6
3.2
49.9
40.5
Minor BPS
48.9
-0
1.7
58.78
41.7

Associated Gene:

Gene:
XRCC6
Ensembl Gene ID:
ENSAPLG00000004469
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004614
41989738 - 42002111
12374