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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42018539_42019057_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42018539 - 42019057
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCAGG
5'SS Class:
major
3'SS Sequence:
TCTTCTTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGTGCAT
U12 Branch Point Sequence:
TTCTTCTTGTTC
Flanking Amino Acid:
EAVKAVAAFLRKDHLSSPPV
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
63.6
48.1
Major BPS
49
-0
1.5
60.7
45.9
Major PPT
84.8
0.78
0.8
84.1
30.8
Minor 5ss
37.4
-1.4
3.1
48.3
47.5
Minor BPS
45.2
-0.4
3.4
68.31
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030477
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018913
42015884 - 42026151
10268