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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42021950_42022989_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42021950 - 42022989
Intron Length:
1040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGGCTT
5'SS Class:
major
3'SS Sequence:
ATTTCTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TGCCTCTGAACC
Flanking Amino Acid:
CDSLCIPMVMNYLERAVSSS
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
66.1
45
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
82.2
0.72
0.8
76.9
31.2
Minor 5ss
35.4
-1.7
3.8
52.3
45.9
Minor BPS
59
0.26
1.5
65.34
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030477
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018913
42015884 - 42026151
10268