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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42025786_42025895_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42025786 - 42025895
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCAC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCTGATTTAATT
Flanking Amino Acid:
LSYFAYTLGDRFVPEAELFL
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
68.4
38.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
79.1
0.65
0.8
72.9
32
Minor 5ss
32.7
-2
3
41
45.6
Minor BPS
61.9
0.45
1.6
76.08
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030477
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018913
42015884 - 42026151
10268