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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42026884_42029935_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
42026884 - 42029935
Intron Length:
3052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTGAC
5'SS Class:
major
3'SS Sequence:
GCTTCCCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAG
U12 Branch Point Sequence:
AGAATGGTAACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
70.2
33.9
Major BPS
56.5
0.16
1.6
66
40.9
Major PPT
74.8
0.56
0.8
65.5
36.1
Minor 5ss
39.2
-1.2
3.1
48.3
42.5
Minor BPS
40.5
-0.7
2.4
50.66
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003972
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004100
42026719 - 42036304
9586