About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42031279_42032995_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42031279 - 42032995
Intron Length:
1717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACACAT
U12 Branch Point Sequence:
TGTTACACATGT
Flanking Amino Acid:
DSTDFKLLHQVSNLCGKCRP
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.8
38.7
Major BPS
69.9
0.49
1
75.2
29.8
Major PPT
88.1
0.86
0.8
80.3
37.3
Minor 5ss
32.4
-2
3
40.4
45.7
Minor BPS
40.2
-0.6
2.3
63.34
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003972
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004100
42026719 - 42036304
9586