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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42033869_42035779_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42033869 - 42035779
Intron Length:
1911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGATCC
5'SS Class:
major
3'SS Sequence:
CATTCACCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTCTTGTATT
Flanking Amino Acid:
LIYQHRYNAEVHQTLTLDLT
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1.1
70.7
34.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
69.5
0.44
0.9
59.9
36.7
Minor 5ss
35.6
-1.6
2.8
43.8
43.5
Minor BPS
62.7
0.48
1.8
84.45
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003972
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004100
42026719 - 42036304
9586