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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42035862_42036062_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42035862 - 42036062
Intron Length:
201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATTTTGT
5'SS Class:
major
3'SS Sequence:
GCTCCCTGTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
CCGATACTAACG
Flanking Amino Acid:
FRKKKPVLLLVSIMQFLRAV
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
73.3
38.2
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
66.1
0.36
0.9
57.7
38.5
Minor 5ss
48.1
-0.2
2.5
67.9
42.9
Minor BPS
41.6
-0.7
1.9
41.18
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003972
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004100
42026719 - 42036304
9586