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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42040659_42041953_F

Intron Information:

Intron Rank:
4
Intron Class:
minor-like
Intron Phase:
2
Intron Coordinates:
42040659 - 42041953
Intron Length:
1295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
CCGTCCACCACAG|C
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
TTGGTTTCCACT
Flanking Amino Acid:
RSTCAKHQDIVCLGGVAVSL
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.6
-0
1.3
55.3
44.3
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
65.2
0.34
0.9
57.7
31.8
Minor 5ss
96.7
1.57
0.7
90.9
28.7
Minor BPS
46.1
-0.2
2
66.75
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020731
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045376
42036861 - 42041999
5139