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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42047401_42047947_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42047401 - 42047947
Intron Length:
547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CCCTGCTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
TGTTCCTGACCT
Flanking Amino Acid:
IYQNTATSFQVLQPQVQSLV
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
73.4
43.3
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
78.3
0.64
0.8
71.7
32.7
Minor 5ss
35.3
-1.7
3.8
55.3
48.9
Minor BPS
67.5
0.63
1.8
85.99
39.7

Associated Gene:

Gene:
SREBF2
Ensembl Gene ID:
ENSAPLG00000003145
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003287
42045309 - 42063116
17808