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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42050835_42052138_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42050835 - 42052138
Intron Length:
1304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGATG
5'SS Class:
strong_major
3'SS Sequence:
GAATTCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGAAT
U12 Branch Point Sequence:
CTTGTCTGAATT
Flanking Amino Acid:
KDLIMGTDAKMHKSGVLRKA
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
75.8
39.8
Major BPS
62
0.3
1.4
71.9
41
Major PPT
73.9
0.54
1
66.5
40.1
Minor 5ss
35.2
-1.7
3.3
47.8
47.9
Minor BPS
60.8
0.42
1.6
75.82
41.6

Associated Gene:

Gene:
SREBF2
Ensembl Gene ID:
ENSAPLG00000003145
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003287
42045309 - 42063116
17808