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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42057086_42058740_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42057086 - 42058740
Intron Length:
1655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTGTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TGACAGCGAAGC
Flanking Amino Acid:
EVVGQEEEEQCEFSSAMEYL
Intron Amino Acid Position:
809

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
77.6
31.4
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
84.1
0.77
0.8
76.2
37.8
Minor 5ss
41.6
-0.9
2.7
51
39.8
Minor BPS
31.7
-1.4
2.3
40.64
37.8

Associated Gene:

Gene:
SREBF2
Ensembl Gene ID:
ENSAPLG00000003145
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003287
42045309 - 42063116
17808