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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42058851_42059286_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42058851 - 42059286
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
ACTGCTCTCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCAAC
U12 Branch Point Sequence:
GTTCCTCCAACC
Flanking Amino Acid:
ASNSVLKSALGPDVVCRWWS
Intron Amino Acid Position:
846

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.7
44.5
Major BPS
49.8
-0
1.2
60
34.3
Major PPT
68.1
0.41
0.8
62.2
34
Minor 5ss
37.4
-1.4
3
42.1
44.4
Minor BPS
49.6
-0
1.9
66.1
38.9

Associated Gene:

Gene:
SREBF2
Ensembl Gene ID:
ENSAPLG00000003145
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003287
42045309 - 42063116
17808