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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42060286_42061042_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42060286 - 42061042
Intron Length:
757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGGGCC
5'SS Class:
major
3'SS Sequence:
GTGGCTCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAG
U12 Branch Point Sequence:
CTGCCCTAAGCT
Flanking Amino Acid:
SGASSTTLSNVIQLLACDLL
Intron Amino Acid Position:
947

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
68.8
38
Major BPS
48.3
-0.1
1.5
55.2
38.9
Major PPT
68.7
0.42
1
61.7
39.9
Minor 5ss
31.9
-2.1
3.5
41.5
38.6
Minor BPS
49.7
0.06
2
69.11
47.5

Associated Gene:

Gene:
SREBF2
Ensembl Gene ID:
ENSAPLG00000003145
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003287
42045309 - 42063116
17808