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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42061229_42061305_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42061229 - 42061305
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATCAT
U12 Branch Point Sequence:
TCATCATCAGCC
Flanking Amino Acid:
AHGFRPAYRKVFLHEATVRL
Intron Amino Acid Position:
1009

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
75.6
0.64
1.1
76.2
37.5
Major PPT
85
0.79
0.7
77
31.8
Minor 5ss
29.9
-2.3
3.4
41
45.6
Minor BPS
47.5
-0.2
2
61.11
43.6

Associated Gene:

Gene:
SREBF2
Ensembl Gene ID:
ENSAPLG00000003145
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003287
42045309 - 42063116
17808