Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42061418_42061509_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

42061418 - 42061509

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGCCCT

5'SS Class:

major

3'SS Sequence:

TCTTTGCGTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAT

U12 Branch Point Sequence:

GCTCTGATAGCT

Flanking Amino Acid:

RRRTPQSSKQGELDVLPGQR

Intron Amino Acid Position:

1046

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.6

0.56

1.3

66.3

45.2

Major BPS

0.72

38.9

Major PPT

74.8

0.56

0.9

73.5

37.1

Minor 5ss

35.9

-1.6

49.4

46.4

Minor BPS

40.3

-0.6

2.3

58.66

44.2

Associated Gene:

Gene:

SREBF2

Ensembl Gene ID:

ENSAPLG00000003145

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003287

42045309 - 42063116

17808