About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42090082_42091121_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42090082 - 42091121
Intron Length:
1040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTACGTATG
5'SS Class:
major
3'SS Sequence:
ACTTTTTCCGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TAATGCAGAAAA
Flanking Amino Acid:
LGKVCFLVTGVGRVNNCSIE
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1.1
72.9
44.2
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
77.5
0.62
0.8
73.7
30.6
Minor 5ss
37.8
-1.4
3
42.4
44.5
Minor BPS
43.7
-0.4
2.1
57.32
40.9

Associated Gene:

Gene:
CENPM
Ensembl Gene ID:
ENSAPLG00000003037
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003075
42089037 - 42093225
4189