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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42091202_42092210_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42091202 - 42092210
Intron Length:
1009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGGA
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTCTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
TTGTCTCTACTT
Flanking Amino Acid:
VFIIDIKSKYSLKNVEASLA
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.5
36.7
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
76.5
0.6
1
72.7
37
Minor 5ss
29.1
-2.4
3.4
38.8
46.3
Minor BPS
53.5
0.19
1.9
75.95
41.6

Associated Gene:

Gene:
CENPM
Ensembl Gene ID:
ENSAPLG00000003037
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003075
42089037 - 42093225
4189