Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42092310_42093088_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

42092310 - 42093088

Intron Length:

779

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTGAGTGCC

5'SS Class:

major

3'SS Sequence:

TGTTATCTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTTAT

U12 Branch Point Sequence:

ATTTGGTTAACC

Flanking Amino Acid:

LREPKEFKISIHLAASLPLP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

71.3

32.2

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

84.6

0.78

0.8

81.5

35.9

Minor 5ss

30.9

-2.2

3.2

40.5

38.7

Minor BPS

57.3

0.21

2.4

76.53

39.9

Associated Gene:

Gene:

CENPM

Ensembl Gene ID:

ENSAPLG00000003037

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003075

42089037 - 42093225

4189