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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42100282_42102858_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42100282 - 42102858
Intron Length:
2577

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTG|GCATGCCCC
5'SS Class:
major
3'SS Sequence:
TCTCCCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GCTTTTTCAATC
Flanking Amino Acid:
MGSGPVESKTEAA
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.2
60.3
42.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
77.5
0.62
0.9
72.5
32.1
Minor 5ss
35
-1.7
4
48.3
42
Minor BPS
56.1
0.17
1.5
62.32
37.9

Associated Gene:

Gene:
SEPTIN3
Ensembl Gene ID:
ENSAPLG00000002801
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002847
42100272 - 42108968
8697