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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42103387_42103916_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42103387 - 42103916
Intron Length:
530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TTATTTGCAATT
Flanking Amino Acid:
KTVEIKAIGHVIEEGGVKMK
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
67.3
36.7
Major BPS
84.6
0.86
1
74
41.2
Major PPT
81.5
0.71
0.8
73.9
36.1
Minor 5ss
32.2
-2
3.4
44
43.3
Minor BPS
48.2
-0
2.1
72.06
39.7

Associated Gene:

Gene:
SEPTIN3
Ensembl Gene ID:
ENSAPLG00000002801
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002847
42100272 - 42108968
8697