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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42103999_42104573_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42103999 - 42104573
Intron Length:
575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CCCACCTTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CCCACCTTAACA
Flanking Amino Acid:
GFGDQINNENCWEPIEKYIN
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.6
34.9
Major BPS
100
1.24
0.5
100
0
Major PPT
66.7
0.38
0.9
60.8
33.7
Minor 5ss
36.6
-1.5
2.9
46.4
44.2
Minor BPS
68.5
0.58
1.4
67.59
44.9

Associated Gene:

Gene:
SEPTIN3
Ensembl Gene ID:
ENSAPLG00000002801
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002847
42100272 - 42108968
8697