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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42105117_42105541_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42105117 - 42105541
Intron Length:
425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TCTCTCTGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCAAAA
U12 Branch Point Sequence:
TGCTCCAAAATG
Flanking Amino Acid:
LEEKIEFKQRVRKELEVNGI
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1
75
35.1
Major BPS
55.5
0.14
1
61.5
32.5
Major PPT
75.4
0.57
0.9
68.6
37.2
Minor 5ss
36.1
-1.6
2.8
42.3
38.4
Minor BPS
48.4
-0.2
2
56.75
44.9

Associated Gene:

Gene:
SEPTIN3
Ensembl Gene ID:
ENSAPLG00000002801
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002847
42100272 - 42108968
8697