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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42107250_42107549_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42107250 - 42107549
Intron Length:
300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGAAAAT
U12 Branch Point Sequence:
GGAAACATAACG
Flanking Amino Acid:
GRKTPWGIIEVENLTHCEFA
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
55.4
0.14
1.3
61.7
41.5
Major PPT
82.8
0.74
0.7
81
31
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
45.9
-0.4
1.9
49.57
42.8

Associated Gene:

Gene:
SEPTIN3
Ensembl Gene ID:
ENSAPLG00000002801
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002847
42100272 - 42108968
8697