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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42120979_42121121_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42120979 - 42121121
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGACAC
U12 Branch Point Sequence:
GGTCCGTGACAC
Flanking Amino Acid:
LGFPAKAVYEVQDVYSGKVT
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
46
-0.2
1.3
52.4
43.3
Major PPT
77.2
0.61
0.8
69
37
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
38.6
-0.8
2.2
47.98
40.7

Associated Gene:

Gene:
NAGA
Ensembl Gene ID:
ENSAPLG00000006939
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007218
42119518 - 42124252
4735