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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42121266_42121513_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42121266 - 42121513
Intron Length:
248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGGGGG
5'SS Class:
major
3'SS Sequence:
TTCCAACCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TCTGCCTCACCT
Flanking Amino Acid:
LGIQGRRIVKEKYRIEVFLR
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.2
59.9
44.9
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
64.5
0.33
0.8
55.5
35
Minor 5ss
25
-2.9
3.2
29.9
43.1
Minor BPS
54.9
0.23
2
75.75
46.8

Associated Gene:

Gene:
NAGA
Ensembl Gene ID:
ENSAPLG00000006939
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007218
42119518 - 42124252
4735