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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42121712_42121916_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42121712 - 42121916
Intron Length:
205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATTGCAA
5'SS Class:
major
3'SS Sequence:
CCCTCCCGTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
AGCTCCTAACCC
Flanking Amino Acid:
GPGHWNDPDMLIIGNFGLSY
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.6
0.3
1.1
53
39.3
Major BPS
72
0.55
1
71.8
31.4
Major PPT
69.8
0.45
0.9
60.9
35.2
Minor 5ss
36.4
-1.5
3.2
43.8
45.8
Minor BPS
49.8
-0
2
61.1
44.2

Associated Gene:

Gene:
NAGA
Ensembl Gene ID:
ENSAPLG00000006939
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007218
42119518 - 42124252
4735