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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42122355_42122607_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42122355 - 42122607
Intron Length:
253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAAGGCT
5'SS Class:
major
3'SS Sequence:
TTCTCTCCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAC
U12 Branch Point Sequence:
ATCTCCTTCACC
Flanking Amino Acid:
CYSSGEEQAKGYPEMTRALN
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
63.8
40.7
Major BPS
65.1
0.38
1.1
68.9
36.5
Major PPT
69.9
0.45
1
71
27.6
Minor 5ss
30.8
-2.2
3.7
39
46.4
Minor BPS
69.8
0.61
1.7
76.53
39.9

Associated Gene:

Gene:
NAGA
Ensembl Gene ID:
ENSAPLG00000006939
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007218
42119518 - 42124252
4735