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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42122786_42122862_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42122786 - 42122862
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTGAGTGAC
5'SS Class:
major
3'SS Sequence:
CCTCTCCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CTCTCCTCACAG
Flanking Amino Acid:
PRGIKALADYVHARGLKLGI
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.3
71.9
33.8
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
78
0.63
0.7
72.3
25.7
Minor 5ss
28.9
-2.4
3.1
33.6
35
Minor BPS
46.5
-0.4
2
52.48
47.8

Associated Gene:

Gene:
NAGA
Ensembl Gene ID:
ENSAPLG00000006939
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007218
42119518 - 42124252
4735