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Intron Name: Anas_platyrhynchos_platyrhynchos_1_42125881_42130030_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

42125881 - 42130030

Intron Length:

4150

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACC|GTGGGTGGT

5'SS Class:

weak_major

3'SS Sequence:

CCCTGCCGCCGAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCCTGCC

U12 Branch Point Sequence:

GGTGCCCTGCCG

Flanking Amino Acid:

ARAGGTPWWDPTVTRSGAIL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

55.5

0.13

1.4

54.4

44.7

Major BPS

22.4

-1.7

3.9

34.3

33.1

Major PPT

46.1

-0.2

1.6

45.2

36.5

Minor 5ss

29.4

-2.4

3.5

43.6

44.4

Minor BPS

35.4

-1.2

3.5

48.94

44.5

Associated Gene:

Gene:

SMDT1

Ensembl Gene ID:

ENSAPLG00000002343

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020080

42125673 - 42130321

4649