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Intron Name: Anas_platyrhynchos_platyrhynchos_1_42130075_42130183_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

42130075 - 42130183

Intron Length:

109

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGCGG

5'SS Class:

strong_major

3'SS Sequence:

GTTGTCCCCGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTCCC

U12 Branch Point Sequence:

GGCTCCTGTCCC

Flanking Amino Acid:

SGAILPKPVKTPFGLLRVFS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

60.4

45.8

Major BPS

29.7

-1.2

4.2

63.1

44.5

Major PPT

73.1

0.52

0.9

66.4

35.7

Minor 5ss

24.7

-2.9

29.5

43.3

Minor BPS

36.5

-1

3.5

53.05

44.1

Associated Gene:

Gene:

SMDT1

Ensembl Gene ID:

ENSAPLG00000002343

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020080

42125673 - 42130321

4649

ENSAPLT00000002345

42126366 - 42130321

3956