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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42133186_42133851_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42133186 - 42133851
Intron Length:
666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGGCCC
5'SS Class:
major
3'SS Sequence:
TGTCTATAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTGTCTATAAAC
Flanking Amino Acid:
PRVIDMLVIKGKMDLQETIH
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
57.6
41.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
67.8
0.4
1
63.2
41.3
Minor 5ss
25.5
-2.8
3.2
33.6
41.9
Minor BPS
60.6
0.31
1.7
72.54
38.3

Associated Gene:

Gene:
NDUFA6
Ensembl Gene ID:
ENSAPLG00000006912
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007169
42132983 - 42134211
1229