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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42135579_42135968_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42135579 - 42135968
Intron Length:
390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
CTCTCATGGATG
Flanking Amino Acid:
KPEAFMPFSAGRRVCLGAQL
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
75.1
41.1
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
85.7
0.8
0.7
80.9
24.3
Minor 5ss
37.2
-1.4
3.1
49.5
46.7
Minor BPS
46.7
-0.4
1.8
51.99
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006049
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006330
42135400 - 42142641
7242