Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42140612_42140870_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

42140612 - 42140870

Intron Length:

259

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGGCCC

5'SS Class:

major

3'SS Sequence:

TCCATAATTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAT

U12 Branch Point Sequence:

TCATCCATAATT

Flanking Amino Acid:

EHVGYGDKSEGIVVARYGHV

Intron Amino Acid Position:

125

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.9

0.66

1.1

63.1

39.8

Major BPS

79.7

0.74

79.6

35.6

Major PPT

72.5

0.51

62.6

42.1

Minor 5ss

30.9

-2.2

3.4

42.7

44.4

Minor BPS

69.1

0.68

1.6

81.86

39.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006049

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006330

42135400 - 42142641

7242