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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_4220807_4288537_F

Intron Information:

Intron Rank:
147224
Intron Class:
major
Intron Phase:
Intron Coordinates:
4220807 - 4288537
Intron Length:
67731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTACCCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CCATTCTCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
77
0.61
0.9
66.8
39.8
Minor 5ss
29.7
-2.3
2.6
33.7
41.6
Minor BPS
59.1
0.28
1.6
63.77
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029293
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023029
4220410 - 4293546
73137