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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42279886_42282285_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42279886 - 42282285
Intron Length:
2400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CATCATTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATCATTC
Flanking Amino Acid:
PEPRRKPPGKTSEKQETLEE
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
32.5
Major BPS
100
1.24
0.5
100
0
Major PPT
76.2
0.59
0.9
69.4
36.1
Minor 5ss
31.9
-2.1
3.6
47.6
48
Minor BPS
51.7
0.03
2
72.01
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031012
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028139
42279826 - 42292255
12430