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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42289009_42289777_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42289009 - 42289777
Intron Length:
769

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTACCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
GCCTTCTTACCC
Flanking Amino Acid:
MGNGVYILVRETGYTETSYG
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
79
0.65
0.8
73.3
30.6
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
57.3
0.21
1.7
61.92
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031012
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028139
42279826 - 42292255
12430