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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42290114_42292200_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42290114 - 42292200
Intron Length:
2087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
ATCACCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TAACAATTATCA
Flanking Amino Acid:
FLFLWSLLCEGGDVDVQQNP
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
78.3
0.7
1
80
32.1
Major PPT
73.8
0.54
0.9
66.1
35
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
45.6
-0.3
2
57.98
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031012
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028139
42279826 - 42292255
12430