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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42334035_42334710_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42334035 - 42334710
Intron Length:
676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTGCCACTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TCTGTTGCCACT
Flanking Amino Acid:
YVSDVRRVAAALQWRRFTLM
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.8
38.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
65.8
0.36
0.9
63.3
38.5
Minor 5ss
30.6
-2.2
3
42
44.7
Minor BPS
38.3
-0.8
2.4
58.3
45.7

Associated Gene:

Gene:
SERHL2
Ensembl Gene ID:
ENSAPLG00000005552
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005767
42333213 - 42339321
6109