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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_42335441_42335646_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42335441 - 42335646
Intron Length:
206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CATCTTTCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TGTCTCATAATG
Flanking Amino Acid:
HSMGGAVAGMFSFLYPEMVD
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
28.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
78.9
0.65
0.8
76.8
31.5
Minor 5ss
26.7
-2.7
3
27.8
37.9
Minor BPS
55
0.02
1.7
62.4
39.4

Associated Gene:

Gene:
SERHL2
Ensembl Gene ID:
ENSAPLG00000005552
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005767
42333213 - 42339321
6109